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LIPT2-AS1 LIPT2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100287896, updated on 8-Mar-2024

Summary

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Official Symbol
LIPT2-AS1provided by HGNC
Official Full Name
LIPT2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56172
See related
Ensembl:ENSG00000254837
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 4.4), thyroid (RPKM 3.6) and 24 other tissues See more
Orthologs
all
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Genomic context

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Location:
11q13.4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (74493380..74498533)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (74422813..74427971)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (74204425..74209578)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene probable ribosome biogenesis protein RLP24 Neighboring gene CYCS pseudogene 27 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3753 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3754 Neighboring gene lipoyl(octanoyl) transferase 2 Neighboring gene uncharacterized LOC124902712 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:74249649-74250198 Neighboring gene uncharacterized LOC105369386

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107410
  2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Clone Names

  • MGC12965, AP001372.2, DKFZp686O15256

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171028.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001372
    Related
    ENST00000526036.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    74493380..74498533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    74422813..74427971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001319240.2: Suppressed sequence

    Description
    NM_001319240.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_198519.1: Suppressed sequence

    Description
    NM_198519.1: This RefSeq was permanently suppressed because it is mostly repetitive sequence.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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