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RPL13AP25 ribosomal protein L13a pseudogene 25 [ Homo sapiens (human) ]

Gene ID: 100287887, updated on 10-Oct-2023

Summary

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Official Symbol
RPL13AP25provided by HGNC
Official Full Name
ribosomal protein L13a pseudogene 25provided by HGNC
Primary source
HGNC:HGNC:36981
See related
Ensembl:ENSG00000136149 AllianceGenome:HGNC:36981
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FWP004; S863-4; RPL13A_11_1314
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Genomic context

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Location:
13q14.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (54440678..54441337, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (53656751..53657410, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (55014813..55015472, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:54701582-54702142 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:54706077-54706772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54706773-54707468 Neighboring gene long intergenic non-protein coding RNA 458 Neighboring gene NANOG hESC enhancer GRCh37_chr13:54759857-54760516 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54841135-54841836 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54841837-54842538 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54842539-54843240 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:54843241-54843942 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:54880943-54881512 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54930851-54931492 Neighboring gene microRNA 1297 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:54947288-54947939 Neighboring gene NANOG hESC enhancer GRCh37_chr13:54957696-54958238 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:55060370-55061569 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:55146084-55146642 Neighboring gene uncharacterized LOC105370213 Neighboring gene uncharacterized LOC124903233 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:55519922-55520785

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012730.1 

    Range
    101..760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    54440678..54441337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    53656751..53657410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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