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SLIRPP1 SLIRP. pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100287757, updated on 10-Oct-2023

Summary

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Official Symbol
SLIRPP1provided by HGNC
Official Full Name
SLIRP. pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:55149
See related
AllianceGenome:HGNC:55149
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SLIRPP1 in Genome Data Viewer
Location:
Xq27.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (147800975..147801347)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (146065610..146065982)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (146882493..146882865)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928863 Neighboring gene microRNA 514a-3 Neighboring gene uncharacterized LOC105373348 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:146458627-146459177 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:146645835-146647034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:146735531-146736093 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:146780386-146781185 Neighboring gene RNA, U6 small nuclear 382, pseudogene Neighboring gene origin of replication upstream of FMR1 Neighboring gene uncharacterized LOC105373349 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:146965512-146965690

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • SRA stem-loop interacting RNA binding protein pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030164.2 

    Range
    101..473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    147800975..147801347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    146065610..146065982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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