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SUPT4H1P2 SPT4 homolog, DSIF elongation factor subunit pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 100287625, updated on 10-Oct-2023

Summary

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Official Symbol
SUPT4H1P2provided by HGNC
Official Full Name
SPT4 homolog, DSIF elongation factor subunit pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:50823
See related
AllianceGenome:HGNC:50823
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
12p13.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (8512072..8512789, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (8495531..8496248, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (8664668..8665385, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:8614029-8615018 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:8615019-8616010 Neighboring gene C-type lectin domain containing 6A Neighboring gene ribosomal protein L15 pseudogene 17 Neighboring gene RNA, U6 small nuclear 275, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5935 Neighboring gene C-type lectin domain family 4 member D Neighboring gene C-type lectin domain family 4 member E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • suppressor of Ty 4 homolog 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030121.3 

    Range
    101..818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    8512072..8512789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    8495531..8496248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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