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RPS27P20 ribosomal protein S27 pseudogene 20 [ Homo sapiens (human) ]

Gene ID: 100271581, updated on 10-Oct-2023

Summary

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Official Symbol
RPS27P20provided by HGNC
Official Full Name
ribosomal protein S27 pseudogene 20provided by HGNC
Primary source
HGNC:HGNC:36333
See related
AllianceGenome:HGNC:36333
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS27_11_1188
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Genomic context

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Location:
11q24.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (129537836..129538173)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (129573332..129573669)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (129407731..129408068)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129185575-129186080 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:129214584-129215466 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:129269826-129270022 Neighboring gene BARX homeobox 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5747 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:129310555-129311079 Neighboring gene NANOG hESC enhancer GRCh37_chr11:129323212-129323713 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:129458354-129458956 Neighboring gene long intergenic non-protein coding RNA 1395 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:129509075-129510274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129593081-129593582 Neighboring gene uncharacterized LOC124902792

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011143.2 

    Range
    101..438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    129537836..129538173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    129573332..129573669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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