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RPL23AP40 ribosomal protein L23a pseudogene 40 [ Homo sapiens (human) ]

Gene ID: 100271462, updated on 10-Oct-2023

Summary

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Official Symbol
RPL23AP40provided by HGNC
Official Full Name
ribosomal protein L23a pseudogene 40provided by HGNC
Primary source
HGNC:HGNC:35587
See related
Ensembl:ENSG00000242321 AllianceGenome:HGNC:35587
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23A_17_408
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Genomic context

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See RPL23AP40 in Genome Data Viewer
Location:
3q22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (138796851..138797239)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (141537569..141537957)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (138515693..138516081)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 72 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta Neighboring gene NANOG hESC enhancer GRCh37_chr3:138448780-138449303 Neighboring gene Sharpr-MPRA regulatory region 1798 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20605 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 39 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20606 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14766 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 25 Neighboring gene Sharpr-MPRA regulatory region 9070 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:138562234-138562975 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:138581611-138582152 Neighboring gene Sharpr-MPRA regulatory region 8152 Neighboring gene CRISPRi-validated cis-regulatory element chr3.4087 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:138598027-138598906 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:138598907-138599785 Neighboring gene ATP synthase membrane subunit c locus 1 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010526.1 

    Range
    101..489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    138796851..138797239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    141537569..141537957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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