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RPS27AP8 RPS27A pseudogene 8 [ Homo sapiens (human) ]

Gene ID: 100271375, updated on 10-Oct-2023

Summary

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Official Symbol
RPS27AP8provided by HGNC
Official Full Name
RPS27A pseudogene 8provided by HGNC
Primary source
HGNC:HGNC:36361
See related
Ensembl:ENSG00000237483 AllianceGenome:HGNC:36361
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS27A_2_437
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Genomic context

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Location:
3q26.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (172225428..172225869, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (175010516..175010957, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (171943218..171943659, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374217 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:171678336-171678836 Neighboring gene FOXA motif-containing MPRA enhancer 130 Neighboring gene NANOG hESC enhancer GRCh37_chr3:171727625-171728138 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20816 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:171757188-171757855 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:171757856-171758522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20817 Neighboring gene fibronectin type III domain containing 3B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20818 Neighboring gene HNF1 motif-containing MPRA enhancer 67 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20820 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:171854185-171855008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:171858305-171859128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20821 Neighboring gene Sharpr-MPRA regulatory region 1756 Neighboring gene uncharacterized LOC124906304 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:171884751-171885290 Neighboring gene Sharpr-MPRA regulatory region 4529 Neighboring gene Sharpr-MPRA regulatory region 6188 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:171911885-171912075 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:171927153-171927716 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:171927717-171928279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20824 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20825 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:171940563-171941066 Neighboring gene Sharpr-MPRA regulatory region 15581 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:171973898-171974093 Neighboring gene RNA, 7SL, cytoplasmic 141, pseudogene Neighboring gene Sharpr-MPRA regulatory region 14584 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:172018611-172019279 Neighboring gene Sharpr-MPRA regulatory region 11565 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:172032476-172033374 Neighboring gene basic leucine zipper and W2 domains 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • ribosomal protein S27a pseudogene 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010054.1 

    Range
    101..542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    172225428..172225869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    175010516..175010957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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