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RPS15AP16 ribosomal protein S15a pseudogene 16 [ Homo sapiens (human) ]

Gene ID: 100271358, updated on 10-Oct-2023

Summary

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Official Symbol
RPS15AP16provided by HGNC
Official Full Name
ribosomal protein S15a pseudogene 16provided by HGNC
Primary source
HGNC:HGNC:36764
See related
Ensembl:ENSG00000239483 AllianceGenome:HGNC:36764
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS15A_7_402
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Genomic context

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Location:
3q21.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (128798841..128799235, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131543503..131543897, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128517684..128518078, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RAB7A, member RAS oncogene family Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128488901-128489401 Neighboring gene ferritin heavy chain 1 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128500166-128500666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128500667-128501167 Neighboring gene RNA, 7SL, cytoplasmic 698, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20495 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20496 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14712 Neighboring gene Sharpr-MPRA regulatory region 6458 Neighboring gene MPRA-validated peak4823 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128564123-128565120 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128565121-128566118 Neighboring gene MARK2 pseudogene 17 Neighboring gene microRNA 12124

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011319.2 

    Range
    101..495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    128798841..128799235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    131543503..131543897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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