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RPS3AP35 RPS3A pseudogene 35 [ Homo sapiens (human) ]

Gene ID: 100271261, updated on 8-Nov-2023

Summary

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Official Symbol
RPS3AP35provided by HGNC
Official Full Name
RPS3A pseudogene 35provided by HGNC
Primary source
HGNC:HGNC:35902
See related
Ensembl:ENSG00000244289 AllianceGenome:HGNC:35902
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS3A_16_877
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Genomic context

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Location:
8p23.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12628432..12629280, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (12894571..12895419, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12485941..12486789, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene FAM86B2 divergent transcript Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12338855-12339594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12344744-12345435 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12354567-12355426 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12355427-12356286 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12358763-12359264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12368735-12369234 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12380441-12380940 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:12382083-12382620 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:12383331-12384025 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12388844-12389380 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:12394565-12395190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12396623-12397488 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12400676-12401176 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12401177-12401677 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12404893-12405684 Neighboring gene uncharacterized LOC729732 Neighboring gene RPS3A pseudogene 34 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12445595-12446325 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12446326-12447056 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12447057-12447786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12448852-12449438 Neighboring gene Sharpr-MPRA regulatory region 3896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12468951-12469450 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12471525-12472026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12516146-12516798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27041 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12523581-12524082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12533771-12534288 Neighboring gene VPS51 pseudogene 19 Neighboring gene olfactory receptor family 7 subfamily E member 8 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • ribosomal protein S3a pseudogene 35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010825.1 

    Range
    101..949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    12628432..12629280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5823842..5824690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    12894571..12895419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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