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RPS20P25 ribosomal protein S20 pseudogene 25 [ Homo sapiens (human) ]

Gene ID: 100271235, updated on 10-Oct-2023

Summary

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Official Symbol
RPS20P25provided by HGNC
Official Full Name
ribosomal protein S20 pseudogene 25provided by HGNC
Primary source
HGNC:HGNC:35866
See related
Ensembl:ENSG00000228375 AllianceGenome:HGNC:35866
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS20_13_989
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Genomic context

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Location:
9q21.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (81410279..81410633)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (93562426..93562780)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (84025194..84025548)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987084 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108158 Neighboring gene VISTA enhancer hs240 Neighboring gene uncharacterized LOC107987022 Neighboring gene NANOG hESC enhancer GRCh37_chr9:83918700-83919201 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:83978407-83979606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:84004299-84004872 Neighboring gene VISTA enhancer hs722 Neighboring gene CST complex subunit TEN1-like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:84138078-84139277 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:84164162-84164662 Neighboring gene VISTA enhancer hs1118 Neighboring gene uncharacterized LOC105376106 Neighboring gene TLE family member 1, transcriptional corepressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010678.1 

    Range
    101..455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    81410279..81410633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    93562426..93562780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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