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RPS20P21 ribosomal protein S20 pseudogene 21 [ Homo sapiens (human) ]

Gene ID: 100271234, updated on 10-Oct-2023

Summary

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Official Symbol
RPS20P21provided by HGNC
Official Full Name
ribosomal protein S20 pseudogene 21provided by HGNC
Primary source
HGNC:HGNC:35993
See related
AllianceGenome:HGNC:35993
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS20_12_916
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Genomic context

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Location:
8q21.11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (73981992..73982510)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (74411254..74411772)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (74894227..74894745)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene glycogenin 1 pseudogene 1 Neighboring gene elongin C Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:74882747-74883636 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr8:74883637-74884525 and GRCh37_chr8:74884526-74885414 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19296 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:74888348-74888563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19297 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:74897195-74897777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27538 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27539 Neighboring gene transmembrane protein 70 Neighboring gene DSTN pseudogene 3 Neighboring gene lymphocyte antigen 96 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27540 Neighboring gene RNA, U6 small nuclear 1300, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010674.4 

    Range
    101..619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    73981992..73982510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    74411254..74411772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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