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RPS25P3 ribosomal protein S25 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100271101, updated on 10-Oct-2023

Summary

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Official Symbol
RPS25P3provided by HGNC
Official Full Name
ribosomal protein S25 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:36073
See related
Ensembl:ENSG00000233416 AllianceGenome:HGNC:36073
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS25_1_198
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Genomic context

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Location:
2p24.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (20606280..20606654, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (20639579..20639953, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (20806040..20806414, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20732136-20733133 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20734131-20735128 Neighboring gene NDUFAF2 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20741509-20742494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20742495-20743479 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11211 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20760853-20761375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20763577-20764533 Neighboring gene HCLS1 binding protein 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20771337-20771837 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20774924-20775424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15393 Neighboring gene VISTA enhancer hs2384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20780177-20780738 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20780739-20781299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20784034-20784599 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20784600-20785164 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20785731-20786294 Neighboring gene HS1BP3 intronic transcript 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20798625-20799569 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20808925-20809424 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20814716-20815668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20816583-20817474 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15396 Neighboring gene uncharacterized LOC124907740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15397 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20840103-20840604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15400 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20850539-20851276 Neighboring gene uncharacterized LOC105373466

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011312.1 

    Range
    101..475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    20606280..20606654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    20639579..20639953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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