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RPS20P23 ribosomal protein S20 pseudogene 23 [ Homo sapiens (human) ]

Gene ID: 100271089, updated on 10-Oct-2023

Summary

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Official Symbol
RPS20P23provided by HGNC
Official Full Name
ribosomal protein S20 pseudogene 23provided by HGNC
Primary source
HGNC:HGNC:36146
See related
Ensembl:ENSG00000242399 AllianceGenome:HGNC:36146
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS20_9_932
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Genomic context

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Location:
8q22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (100776512..100776868, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (101902526..101902882, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (101788740..101789096, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene microRNA 7705 Neighboring gene poly(A) binding protein cytoplasmic 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:101733555-101734387 Neighboring gene H3K27ac hESC enhancers GRCh37_chr8:101734442-101734942 and GRCh37_chr8:101734943-101735443 Neighboring gene RNA, U6atac small nuclear 41, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr8:101768155-101768656 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:101801444-101802174 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27715 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19423 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27716 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27717 Neighboring gene RNA, U4 small nuclear 83, pseudogene Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:101862990-101863657 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:101880913-101882112 Neighboring gene CRISPRi-validated cis-regulatory element chr8.2573 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:101904843-101905521 Neighboring gene ribosomal protein S26 pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011244.1 

    Range
    101..457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    100776512..100776868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    101902526..101902882 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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