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RPS20P9 ribosomal protein S20 pseudogene 9 [ Homo sapiens (human) ]

Gene ID: 100271080, updated on 10-Oct-2023

Summary

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Official Symbol
RPS20P9provided by HGNC
Official Full Name
ribosomal protein S20 pseudogene 9provided by HGNC
Primary source
HGNC:HGNC:36472
See related
Ensembl:ENSG00000237162 AllianceGenome:HGNC:36472
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS20_3_230
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Genomic context

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See RPS20P9 in Genome Data Viewer
Location:
2p15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (62939873..62940322)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (62946954..62947403)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (63167008..63167457)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:62804913-62806112 Neighboring gene ribosomal L24 domain containing 1 pseudogene 2 Neighboring gene phosphoserine aminotransferase 1 pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr2:62874108-62874609 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15867 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15869 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:62898481-62898982 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15870 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11540 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11541 Neighboring gene EH domain binding protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15871 Neighboring gene Sharpr-MPRA regulatory region 1961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15872 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:63062886-63063515 Neighboring gene VISTA enhancer hs690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15873 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:63270899-63271878 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:63271879-63272858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:63274968-63275716 Neighboring gene VISTA enhancer hs1066 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11542 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:63280773-63281719 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:63283391-63283950 Neighboring gene EHBP1 antisense RNA 1 Neighboring gene orthodenticle homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011191.3 

    Range
    101..550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    62939873..62940322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    62946954..62947403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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