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RPL6P5 ribosomal protein L6 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 100270844, updated on 10-Oct-2023

Summary

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Official Symbol
RPL6P5provided by HGNC
Official Full Name
ribosomal protein L6 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:36199
See related
Ensembl:ENSG00000214064 AllianceGenome:HGNC:36199
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL6_4_280
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Genomic context

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Location:
2q22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (145337233..145338063)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (145785286..145786116)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (146094801..146095631)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene testis expressed 41 Neighboring gene long intergenic non-protein coding RNA 1966 Neighboring gene uncharacterized LOC100505498 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:145764403-145765602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16607 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:146248222-146248369 Neighboring gene uncharacterized LOC105373664 Neighboring gene MPRA-validated peak3896 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:146445101-146445602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11994 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16608 Neighboring gene uncharacterized LOC124908059

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011303.1 

    Range
    101..931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    145337233..145338063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    145785286..145786116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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