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GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 [ Homo sapiens (human) ]

Gene ID: 100240709, updated on 10-Oct-2023

Summary

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Official Symbol
GAPDHP44provided by HGNC
Official Full Name
glyceraldehyde 3 phosphate dehydrogenase pseudogene 44provided by HGNC
Primary source
HGNC:HGNC:37801
See related
AllianceGenome:HGNC:37801
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GAPDH
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Genomic context

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Location:
12q14.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (62755153..62756433)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (62733926..62735206)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (63148933..63150213)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:63047149-63047770 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:63047771-63048392 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:63049635-63050255 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:63052702-63053227 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:63053228-63053754 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1H Neighboring gene ribosomal protein L32 pseudogene 26 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:63095785-63096388 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:63097597-63098198 Neighboring gene NANOG hESC enhancer GRCh37_chr12:63111348-63111860 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:63118179-63119378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4610 Neighboring gene uncharacterized LOC105369795 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:63259550-63260379 Neighboring gene RNA, U1 small nuclear 83, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr12:63301007-63301189 Neighboring gene Sharpr-MPRA regulatory region 8347 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:63328139-63328640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4611 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30791 Neighboring gene ribosomal protein L14 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Basic biology of GAPDH. Seidler NW. Adv Exp Med Biol, 2013. PMID 22851445
  2. The abundance of processed pseudogenes derived from glycolytic genes is correlated with their expression level. McDonell L, et al. Genome, 2012 Feb. PMID 22309162
  3. Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity. Liu YJ, et al. BMC Genomics, 2009 Oct 16. PMID 19835609, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009335.2 

    Range
    101..1381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    62755153..62756433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    62733926..62735206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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