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LINC01634 long intergenic non-protein coding RNA 1634 [ Homo sapiens (human) ]

Gene ID: 100192420, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01634provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1634provided by HGNC
Primary source
HGNC:HGNC:52421
See related
Ensembl:ENSG00000235295 AllianceGenome:HGNC:52421
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01634 in Genome Data Viewer
Location:
22q11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18029385..18037968)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (18700802..18709398)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (18512151..18520734)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18474404-18474908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18474909-18475413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18476614-18477114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18477115-18477615 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18644 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13443 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13444 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:18484257-18484953 Neighboring gene microRNA 648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18646 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18645 Neighboring gene RHEB pseudogene 3 Neighboring gene uncharacterized LOC105372853 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18544003-18544503 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13447 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:18552873-18554072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18647 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18649 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:18564135-18564340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18651 Neighboring gene peroxisomal biogenesis factor 26 Neighboring gene ADP ribosylation factor like GTPase 2 binding protein pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • XXbac-B476C20.17

Clone Names

  • FLJ41941

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024417.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC016027, AK123935
    Related
    ENST00000443243.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    18029385..18037968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    18700802..18709398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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