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RNU7-71P RNA, U7 small nuclear 71 pseudogene [ Homo sapiens (human) ]

Gene ID: 100151668, updated on 10-Oct-2023

Summary

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Official Symbol
RNU7-71Pprovided by HGNC
Official Full Name
RNA, U7 small nuclear 71 pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:34167
See related
Ensembl:ENSG00000251868 AllianceGenome:HGNC:34167
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U7.71
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Genomic context

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Location:
16q22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (72821935..72821992, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (78639746..78639803, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (72855834..72855891, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2952 Neighboring gene VISTA enhancer hs20 Neighboring gene ZFHX3 antisense RNA 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:72756067-72756616 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:72756617-72757164 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:72769685-72770266 Neighboring gene RNA, U7 small nuclear 90 pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44255 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:72804631-72805830 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:72822417-72823032 Neighboring gene keratin 18 pseudogene 18 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:72879311-72879810 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7689 Neighboring gene uncharacterized LOC124903715 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:72910943-72912142 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:72912157-72912658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:72923795-72924295 Neighboring gene zinc finger homeobox 3 Neighboring gene Sharpr-MPRA regulatory region 11593 Neighboring gene Sharpr-MPRA regulatory region 14271 Neighboring gene VISTA enhancer hs16 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:72995175-72995675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:73049174-73049674 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11101 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:73066446-73067008 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:73069350-73070204 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:73070205-73071057 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:73074111-73074623 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:73078457-73078957 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:73081321-73081856 Neighboring gene uncharacterized LOC124903719 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:73082393-73082928

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. U7 snRNAs: a computational survey. Marz M, et al. Genomics Proteomics Bioinformatics, 2007 Dec. PMID 18267300, Free PMC Article
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007687.1 

    Range
    101..158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    72821935..72821992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    78639746..78639803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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