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TMCO1-AS1 TMCO1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100147773, updated on 10-Oct-2023

Summary

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Official Symbol
TMCO1-AS1provided by HGNC
Official Full Name
TMCO1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:54046
See related
AllianceGenome:HGNC:54046
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 2.7), colon (RPKM 2.6) and 17 other tissues See more
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Genomic context

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Location:
1q24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (165768929..165775449)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (165115010..165121532)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (165738166..165744686)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165667608-165668190 Neighboring gene carbonic anhydrase 14 pseudogene Neighboring gene MPRA-validated peak437 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2021 Neighboring gene transmembrane and coiled-coil domains 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165737716-165738392 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165738393-165739068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1502 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165797205-165797758 Neighboring gene ribosomal protein L26 pseudogene 12 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165812106-165812292 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165819835-165820049 Neighboring gene uridine-cytidine kinase 2 Neighboring gene Sharpr-MPRA regulatory region 1747 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165830150-165830650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165830651-165831151 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2022 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:165867758-165868957 Neighboring gene Sharpr-MPRA regulatory region 10580 Neighboring gene microRNA 3658

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study and meta-analysis of intraocular pressure. Ozel AB, et al. Hum Genet, 2014 Jan. PMID 24002674, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study and meta-analysis of intraocular pressure.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • FLJ42974

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125374.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451074

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    165768929..165775449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    165115010..165121532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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