CBR1-AS1 CBR1 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: CBR1-AS1provided by HGNC
Official Full Name: CBR1 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:55777
See related: Ensembl:ENSG00000230212
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Broad expression in duodenum (RPKM 51.4), small intestine (RPKM 31.1) and 16 other tissues See more
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Genomic context

Location:: 21q22.12

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	21	NC_000021.9 (36069642..36126640, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	21	NC_060945.1 (34452701..34509664, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	21	NC_000021.8 (37441940..37498938, complement)

Chromosome 21 - NC_000021.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

D21S1842 (e-PCR)
- UniSTS:82946

GDB:185176 (e-PCR)
- UniSTS:155431

SHGC-52083 (e-PCR)
- UniSTS:45610

RH17586 (e-PCR)
- UniSTS:45641

D21S1864 (e-PCR)
- UniSTS:5220

RH91556 (e-PCR)
- UniSTS:88193

SHGC-9556 (e-PCR)
- UniSTS:70297

CBR1_1984 (e-PCR)
- UniSTS:280476

G34784 (e-PCR)
- UniSTS:56515

SHGC-52102 (e-PCR)
- UniSTS:56292

SHGC-9599 (e-PCR)
- UniSTS:14335

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.