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GOLGA6L3P golgin A6 family like 3, pseudogene [ Homo sapiens (human) ]

Gene ID: 100133220, updated on 8-Nov-2023

Summary

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Official Symbol
GOLGA6L3Pprovided by HGNC
Official Full Name
golgin A6 family like 3, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:37441
See related
Ensembl:ENSG00000188388 AllianceGenome:HGNC:37441
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GOLGA6L3
Expression
Broad expression in testis (RPKM 13.5), ovary (RPKM 6.3) and 24 other tissues See more
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Genomic context

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Location:
15q25.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (85240351..85247187)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (82992547..82999384)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (85783582..85790418)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A2 pseudogene Neighboring gene golgin A2 pseudogene Neighboring gene RNA, 7SL, cytoplasmic 428, pseudogene Neighboring gene uncharacterized LOC105370948 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:85773184-85773406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10002 Neighboring gene dynamin 1 pseudogene 45 Neighboring gene ADAMTS7 pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:85802852-85803352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:85803353-85803853 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:85805463-85806020

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • golgi autoantigen, golgin subfamily a, 6-like 3
  • golgin A6 family like 3

Clone Names

  • FLJ61448

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171665.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC044860
    Related
    ENST00000507199.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    85240351..85247187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791797.1 Reference GRCh38.p14 PATCHES

    Range
    1001753..1008752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    82992547..82999384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001310153.2: Suppressed sequence

    Description
    NM_001310153.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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