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GOLGA8DP golgin A8 family member D, pseudogene [ Homo sapiens (human) ]

Gene ID: 100132979, updated on 23-Nov-2023

Summary

Official Symbol
GOLGA8DPprovided by HGNC
Official Full Name
golgin A8 family member D, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:32376
See related
Ensembl:ENSG00000290359 AllianceGenome:HGNC:32376
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GOLGA8D
Summary
Predicted to be involved in Golgi organization. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 25.4) See more
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Genomic context

Location:
15q11.2
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (23157340..23170783)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (20841202..20854647)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (22702285..22715728, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:22744007-22744507 Neighboring gene golgin A6 family like 1 Neighboring gene NANOG hESC enhancer GRCh37_chr15:22740333-22740853 Neighboring gene MPHOSPH10 pseudogene 5 Neighboring gene RNA, 7SL, cytoplasmic 106, pseudogene Neighboring gene ABCB10 pseudogene 1 Neighboring gene microRNA 4509-1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • golgi autoantigen, golgin subfamily a, 8D

Clone Names

  • FLJ77521, MGC102859

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in Golgi cis cisterna IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in Golgi cisterna membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027407.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC116165
    Related
    ENST00000620011.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    23157340..23170783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    4052103..4065545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187603.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    257848..271291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187659.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    126850..140293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    20841202..20854647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)