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SRP14-DT SRP14 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100131089, updated on 10-Oct-2023

Summary

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Official Symbol
SRP14-DTprovided by HGNC
Official Full Name
SRP14 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48619
See related
Ensembl:ENSG00000248508 AllianceGenome:HGNC:48619
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SRP14-AS1
Expression
Ubiquitous expression in thyroid (RPKM 1.7), heart (RPKM 1.6) and 25 other tissues See more
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Genomic context

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See SRP14-DT in Genome Data Viewer
Location:
15q15.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (40039311..40067509)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (37844581..37874346)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (40331512..40359710)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40251723-40252224 Neighboring gene H3 histone pseudogene 38 Neighboring gene Sharpr-MPRA regulatory region 10520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40314575-40315076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40315077-40315576 Neighboring gene uncharacterized LOC124903471 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:40330400-40331345 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:40331346-40332290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9223 Neighboring gene signal recognition particle 14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40347031-40347610 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9226 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:40354716-40355551 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9228 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:40360521-40360704 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9229 Neighboring gene uncharacterized LOC105370787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40369263-40369763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:40374533-40375217 Neighboring gene VISTA enhancer hs1611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40389627-40390140 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6317 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40395438-40396002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40396003-40396568 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:40397101-40397293 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9233 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9234 Neighboring gene Sharpr-MPRA regulatory region 12469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:40399683-40400378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6318 Neighboring gene Bcl2 modifying factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma. Postel-Vinay S, et al. Nat Genet, 2012 Feb 12. PMID 22327514
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • SRP14 antisense RNA1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040059.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC021755, AC025168, AI424388, AK127696, EB388563

  2. NR_040060.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC021755, AC025168, AI424388, AK127696
    Related
    ENST00000504245.8

  3. NR_040061.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons, includes two alternate exons and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC025168, AK127696, BM706250, BU737016
    Related
    ENST00000560341.2

  4. NR_040062.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC025168, AK127696, BX111264
    Related
    ENST00000660446.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    40039311..40067509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    37844581..37874346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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