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VAC14-AS1 VAC14 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100130894, updated on 10-Oct-2023

Summary

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Official Symbol
VAC14-AS1provided by HGNC
Official Full Name
VAC14 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48605
See related
Ensembl:ENSG00000214353 AllianceGenome:HGNC:48605
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q22.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (70755095..70773251)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (76566269..76584423)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (70788998..70807154)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70613305-70613810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70613811-70614316 Neighboring gene interleukin 34 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70655383-70655930 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:70655931-70656478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70683694-70684194 Neighboring gene MTSS I-BAR domain containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70721484-70721990 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70726089-70726916 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70726917-70727742 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70727743-70728568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70728569-70729394 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70729395-70730221 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70731048-70731874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70731875-70732699 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70736831-70737596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70737597-70738364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70738365-70739130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70739131-70739896 Neighboring gene VAC14 component of PIKFYVE complex Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70748263-70748982 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70750423-70751140 Neighboring gene Sharpr-MPRA regulatory region 12359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70771856-70772386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70774210-70775017 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70779970-70780470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70780471-70780971 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70781216-70781850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70784627-70785306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70788515-70789155 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70789156-70789796 Neighboring gene tRNA-Gly (anticodon GCC) 3-1 Neighboring gene tRNA-Gly (anticodon GCC) 2-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034083.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020763, KF456200
    Related
    ENST00000398177.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    70755095..70773251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    76566269..76584423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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