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BTNL12P butyrophilin like 12, pseudogene [ Homo sapiens (human) ]

Gene ID: 100130701, updated on 10-Oct-2023

Summary

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Official Symbol
BTNL12Pprovided by HGNC
Official Full Name
butyrophilin like 12, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:52935
See related
AllianceGenome:HGNC:52935
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LRRC58-DT
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3q13.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (120349447..120415938)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (123069001..123135513)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:120032196-120032799 Neighboring gene PTOV1 pseudogene 1 Neighboring gene leucine rich repeat containing 58 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14635 Neighboring gene uncharacterized LOC124906274 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:120085712-120086911 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:120096604-120097210 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20332 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14636 Neighboring gene follistatin like 1 Neighboring gene microRNA 198 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:120132534-120133216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20333 Neighboring gene uncharacterized LOC124900546 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:120188655-120189576 Neighboring gene CDK2AP1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • LRRC58 divergent transcript

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    120349447..120415938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007096031.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    123069001..123135513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073759.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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