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ISCA1P6 iron-sulfur cluster assembly 1 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 100130549, updated on 10-Oct-2023

Summary

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Official Symbol
ISCA1P6provided by HGNC
Official Full Name
iron-sulfur cluster assembly 1 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:38027
See related
AllianceGenome:HGNC:38027
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q14.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (128517289..128519257, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (128953285..128955253, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (129274863..129276831, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129142763-129143262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129146579-129147236 Neighboring gene uncharacterized LOC105373611 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129165673-129166670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129166671-129167666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129195850-129196350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129196351-129196851 Neighboring gene Sharpr-MPRA regulatory region 12782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129205981-129206972 Neighboring gene RNA, 5S ribosomal pseudogene 103 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129232933-129233434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129243347-129243848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129243849-129244348 Neighboring gene Sharpr-MPRA regulatory region 8571 Neighboring gene MPRA-validated peak3859 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129258456-129258956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16513 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:129294078-129294874 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:129294875-129295671 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129310369-129311024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129338761-129339262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129349650-129350150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129350151-129350651 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129358354-129358854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129358855-129359355 Neighboring gene uncharacterized LOC124907887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16514 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129394036-129394585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129394586-129395134 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129396234-129396783 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129395685-129396233 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129398907-129399566 Neighboring gene NANOG hESC enhancer GRCh37_chr2:129401849-129402350 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129402677-129403594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129421710-129422444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129439760-129440284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129448087-129448879 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:129450556-129450729 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16516 Neighboring gene uncharacterized LOC124907888

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • iron-sulfur cluster assembly 1 homolog pseudogene 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023024.2 

    Range
    101..2069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    128517289..128519257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    128953285..128955253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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