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LINC00552 long intergenic non-protein coding RNA 552 [ Homo sapiens (human) ]

Gene ID: 100130386, updated on 8-Nov-2023

Summary

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Official Symbol
LINC00552provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 552provided by HGNC
Primary source
HGNC:HGNC:43692
See related
Ensembl:ENSG00000279770 AllianceGenome:HGNC:43692
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC00552 in Genome Data Viewer
Location:
13q34
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (113748511..113751089, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (112957676..112959704, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (114451484..114454062, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene transcription factor Dp-1 Neighboring gene uncharacterized LOC124903219 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:114279174-114280373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114305936-114306560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114306561-114307185 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114311832-114312332 Neighboring gene ATPase H+/K+ transporting subunit beta Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:114426222-114426826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114426827-114427432 Neighboring gene basic salivary proline-rich protein 4-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114446225-114446726 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:114456174-114456392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114461359-114461860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114462417-114462918 Neighboring gene transmembrane protein 255B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114491163-114491692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114491693-114492221 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114504133-114505007 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114506713-114507271 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8041 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8042 Neighboring gene uncharacterized LOC124903220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114523566-114524115 Neighboring gene GAS6 antisense RNA 1 Neighboring gene growth arrest specific 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • FLJ32873

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028064.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC187648, AK057435
    Related
    ENST00000625151.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    113748511..113751089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160011.1 Reference GRCh38.p14 PATCHES

    Range
    50110..52688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187596.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    22003..24579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    112957676..112959704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083743.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001137672.1: Suppressed sequence

    Description
    NM_001137672.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

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