SUPT20HL1 SUPT20H like 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: SUPT20HL1provided by HGNC
Official Full Name: SUPT20H like 1provided by HGNC
Primary source: HGNC:HGNC:30773
See related: Ensembl:ENSG00000223731 AllianceGenome:HGNC:30773
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: SPT20L; FAM48B1
Summary: Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: Xp22.11

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	X	NC_000023.11 (24360639..24367839)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	X	NC_060947.1 (23944797..23952006)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	X	NC_000023.10 (24378756..24385956)

Chromosome X - NC_000023.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

DXS8099 (e-PCR), detects polymorphism
- UniSTS:14083

AFM309vb1 (e-PCR)
- UniSTS:264

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables transcription coregulator activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of SAGA complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: transcription factor SPT20 homolog-like 1

Names: SPT20 homolog, SAGA complex component like 1; family with sequence similarity 48, member B1; suppressor of Ty 20 homolog-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001136234.3 → NP_001129706.3 transcription factor SPT20 homolog-like 1

Status: VALIDATED

Source sequence(s)

AC004552

Consensus CDS

CCDS94581.1

UniProtKB/Swiss-Prot

Q3ZLR7

UniProtKB/TrEMBL

A0A7I2YQ69

Related

ENSP00000509731.1, ENST00000686983.1

Conserved Domains (2) summary

PHA03247
Location:381 → 764

PHA03247; large tegument protein UL36; Provisional

pfam12090
Location:64 → 217

Spt20; Spt20 family