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LINC02961 long intergenic non-protein coding RNA 2961 [ Homo sapiens (human) ]

Gene ID: 100130249, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02961provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2961provided by HGNC
Primary source
HGNC:HGNC:55986
See related
Ensembl:ENSG00000279261
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PP2672
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Genomic context

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See LINC02961 in Genome Data Viewer
Location:
1q42.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (234757619..234760056, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (234148377..234150830, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (234893366..234895803, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234860133-234860695 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234860696-234861259 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234861823-234862386 Neighboring gene Sharpr-MPRA regulatory region 12432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2765 Neighboring gene long intergenic non-protein coding RNA 1132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234869880-234870380 Neighboring gene uncharacterized LOC105373210 Neighboring gene uncharacterized LOC107985364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234896325-234896904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234896905-234897482 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:234907153-234908352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2768 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2769 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234912515-234913091 Neighboring gene uncharacterized LOC124904557 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:234915140-234915338 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234915801-234916406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234916407-234917010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234920999-234921744 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234941970-234942552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234942553-234943136 Neighboring gene uncharacterized LOC107985365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234951823-234952324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234952325-234952824 Neighboring gene RNY4 pseudogene 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_148962.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF193050, AL360294
    Related
    ENST00000640945.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    234757619..234760056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    234148377..234150830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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