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CHMP4AP1 CHMP4A pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100130209, updated on 10-Oct-2023

Summary

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Official Symbol
CHMP4AP1provided by HGNC
Official Full Name
CHMP4A pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:54739
See related
AllianceGenome:HGNC:54739
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2p12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (81418415..81419350, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (81418966..81419901, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (81645539..81646474, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374827 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:81147049-81147550 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81420933-81421434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81421435-81421934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:81433285-81433784 Neighboring gene ANKRD11 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:81622884-81623398 Neighboring gene uncharacterized LOC102724542 Neighboring gene long intergenic non-protein coding RNA 1815 Neighboring gene RNA, 5S ribosomal pseudogene 99

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • charged multivesicular body protein 4A pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021509.2 

    Range
    101..1036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    81418415..81419350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    81418966..81419901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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