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SETP5 SET pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 100130014, updated on 10-Oct-2023

Summary

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Official Symbol
SETP5provided by HGNC
Official Full Name
SET pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:42924
See related
AllianceGenome:HGNC:42924
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
9q34.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (137640822..137641707, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (149892504..149893389, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (140535274..140536159, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902318 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20634 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20635 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29355 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20636 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:140513865-140514583 Neighboring gene ARRDC1 antisense RNA 1 Neighboring gene arrestin domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29356 Neighboring gene Sharpr-MPRA regulatory region 6441 Neighboring gene euchromatic histone lysine methyltransferase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29357 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140558803-140559307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140559363-140560044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29359 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140569123-140569639 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:140573165-140573881 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140574605-140575206 Neighboring gene uncharacterized LOC124902319 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140575207-140575806 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140576860-140577836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140584357-140584859 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140589985-140590669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140602949-140603910 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20637 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140616633-140617551 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140617552-140618469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140621001-140621500 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140635595-140636095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140643003-140643502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140652245-140652746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29367 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29368 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29369 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:140657628-140658827 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140674415-140675346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140676414-140676914 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:140679830-140680474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140681121-140681765 Neighboring gene forkhead box H1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140682311-140682830 Neighboring gene uncharacterized LOC651337

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • SET nuclear oncogene pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021638.2 

    Range
    43..928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    137640822..137641707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    149892504..149893389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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