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LOC100129931 uncharacterized LOC100129931 [ Homo sapiens (human) ]

Gene ID: 100129931, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100129931
Gene description
uncharacterized LOC100129931
See related
Ensembl:ENSG00000245748
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 15.3), skin (RPKM 14.9) and 25 other tissues See more
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Genomic context

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Location:
4p16.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (7030554..7046231, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (7002390..7018066, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (7032281..7047958, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15237 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15238 Neighboring gene KIAA0232 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6894345-6894901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6902995-6903643 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:6903699-6903925 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21263 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6917519-6918483 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6918484-6919448 Neighboring gene TBC1 domain family member 14 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:6937591-6937729 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15241 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6941327-6941904 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6941905-6942482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21265 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6944645-6945470 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6945471-6946296 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6946297-6947122 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6961085-6961585 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6972505-6973142 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6974420-6975057 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:6975058-6975696 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6987679-6988438 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6988439-6989198 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21269 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:7009000-7009638 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:7009639-7010278 Neighboring gene RN7SK pseudogene 292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7017555-7018058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7018059-7018562 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:7023455-7024032 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15243 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15244 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21271 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21273 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7048917-7049418 Neighboring gene cilia and flagella associated protein 184 Neighboring gene uncharacterized LOC105374368 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:7067016-7067117 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15247 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15249 Neighboring gene transcriptional adaptor 2B Neighboring gene uncharacterized LOC105374370 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21274 Neighboring gene GrpE like 1, mitochondrial Neighboring gene long intergenic non-protein coding RNA 2447

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033828.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097382, AK126065
    Related
    ENST00000500031.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    7030554..7046231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    7002390..7018066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials