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C4orf46P1 C4orf46 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100129478, updated on 10-Oct-2023

Summary

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Official Symbol
C4orf46P1provided by HGNC
Official Full Name
C4orf46 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:55882
See related
AllianceGenome:HGNC:55882
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C4o4rf46P1
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Genomic context

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See C4orf46P1 in Genome Data Viewer
Location:
16p13.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (231084..232010)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (224910..225836)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (281083..282009)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10202 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6903 Neighboring gene hemoglobin subunit theta 1 Neighboring gene LUC7 like Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:279124-279820 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:284237-284780 Neighboring gene family with sequence similarity 234 member A Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:307431-308390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:322947-323484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:323485-324021 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:325209-325860 Neighboring gene regulator of G protein signaling 11 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:330732-331489 Neighboring gene Rho GDP dissociation inhibitor gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029255.1 

    Range
    101..1027
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    231084..232010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    224910..225836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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