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SMIM10L1 small integral membrane protein 10 like 1 [ Homo sapiens (human) ]

Gene ID: 100129361, updated on 8-Mar-2024

Summary

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Official Symbol
SMIM10L1provided by HGNC
Official Full Name
small integral membrane protein 10 like 1provided by HGNC
Primary source
HGNC:HGNC:49847
See related
Ensembl:ENSG00000256537 AllianceGenome:HGNC:49847
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
mouse all
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Genomic context

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Location:
12p13.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (11171194..11176016)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (11040401..11045222)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (11323793..11328615)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene PRH1-PRR4 readthrough Neighboring gene proline rich protein HaeIII subfamily 1 Neighboring gene PRH1-TAS2R14 readthrough Neighboring gene taste 2 receptor member 30 Neighboring gene taste 2 receptor member 18 pseudogene Neighboring gene taste 2 receptor member 67 pseudogene Neighboring gene taste 2 receptor member 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small integral membrane protein 10 like 1 downregulation enhances differentiation of adipose progenitor cells. Nebe M, et al. Biochem Biophys Res Commun, 2022 May 14. PMID 35290761
  2. The finished DNA sequence of human chromosome 12. Scherer SE, et al. Nature, 2006 Mar 16. PMID 16541075

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Small integral membrane protein 10 like 1 downregulation enhances differentiation of adipose progenitor cells.
    Title: Small integral membrane protein 10 like 1 downregulation enhances differentiation of adipose progenitor cells.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

General protein information

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Preferred Names
small integral membrane protein 10-like protein 1
Names
Small integral membrane protein 10-like protein 1
chromosome X open reading frame 69-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271592.2 → NP_001258521.1  small integral membrane protein 10-like protein 1

    See identical proteins and their annotated locations for NP_001258521.1

    Status: VALIDATED

    Source sequence(s)
    AC134349
    Consensus CDS
    CCDS81667.1
    UniProtKB/Swiss-Prot
    A0A0G2JPJ8, P0DMW3
    Related
    ENSP00000488907.1, ENST00000622602.2
    Conserved Domains (1) summary
    pfam15118
    Location:12 → 68
    DUF4560; Domain of unknown function (DUF4560)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    11171194..11176016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003571050.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    401848..406670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187658.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    366134..370955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    11040401..11045222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_032701.1: Suppressed sequence

    Description
    NG_032701.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.

  2. NR_036583.1: Suppressed sequence

    Description
    NR_036583.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DMW3.2 GenPept UniProtKB/Swiss-Prot:P0DMW3

Gene LinkOut

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