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RPS6P22 ribosomal protein S6 pseudogene 22 [ Homo sapiens (human) ]

Gene ID: 100129227, updated on 10-Oct-2023

Summary

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Official Symbol
RPS6P22provided by HGNC
Official Full Name
ribosomal protein S6 pseudogene 22provided by HGNC
Primary source
HGNC:HGNC:35655
See related
Ensembl:ENSG00000244390 AllianceGenome:HGNC:35655
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS6_10_1242
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Genomic context

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Location:
12q14.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (59020144..59020925)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (59007418..59008199)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (59413925..59414706)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100506869 Neighboring gene long intergenic non-protein coding RNA 2388 Neighboring gene Sharpr-MPRA regulatory region 8919 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30091 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30105 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:59235169-59235668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:59254059-59254582 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:59281329-59282528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6570 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4601 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4602 Neighboring gene NANOG hESC enhancer GRCh37_chr12:59318825-59319449 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:59327314-59327814 Neighboring gene leucine rich repeats and immunoglobulin like domains 3 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30204 Neighboring gene LRIG3 divergent transcript Neighboring gene VISTA enhancer hs1468 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30226 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:59448831-59450030 Neighboring gene VISTA enhancer hs1427 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30249 Neighboring gene methyltransferase like 15 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6571 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30360 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:59587037-59588236 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:59716766-59717659 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:59720343-59721236 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:59722131-59723023 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:59751164-59752363 Neighboring gene RNA, U6 small nuclear 279, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011052.1 

    Range
    101..882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    59020144..59020925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315941.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    97929..98710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    59007418..59008199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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