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RPL10AP6 ribosomal protein L10a pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 100128936, updated on 10-Oct-2023

Summary

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Official Symbol
RPL10AP6provided by HGNC
Official Full Name
ribosomal protein L10a pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:36504
See related
Ensembl:ENSG00000226360 AllianceGenome:HGNC:36504
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL10A_1_376
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Genomic context

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Location:
3p14.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (61742425..61743137, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (61785693..61786405, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (61728099..61728811, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909388 Neighboring gene protein tyrosine phosphatase receptor type G Neighboring gene uncharacterized LOC124906245 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:61657567-61658404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:61665901-61666400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:61671542-61672277 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61673811-61674444 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61676017-61676556 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61677824-61678324 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61678325-61678825 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61678925-61679473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:61680893-61681393 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61685048-61685943 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61686839-61687733 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61690681-61691408 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61689953-61690680 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:61700687-61701188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:61701189-61701688 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:61815091-61815694 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:61815695-61816299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61852378-61852880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61852881-61853381 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61857459-61858243 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61860549-61861255 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:61932324-61933045 Neighboring gene Sharpr-MPRA regulatory region 14465 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:62026884-62028083 Neighboring gene RNA, U2 small nuclear 10, pseudogene Neighboring gene inhibitor of DNA binding 2B (pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. Yoshihama M, et al. Genome Res, 2002 Mar. PMID 11875025, Free PMC Article
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010877.2 

    Range
    101..813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    61742425..61743137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    61785693..61786405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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