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GPR50-AS1 GPR50 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128688, updated on 10-Oct-2023

Summary

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Official Symbol
GPR50-AS1provided by HGNC
Official Full Name
GPR50 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40259
See related
Ensembl:ENSG00000234696 AllianceGenome:HGNC:40259
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
Xq28
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (151175198..151177836, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (149443177..149445815, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (150343670..150346308, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 525 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:150342751-150343720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:150343721-150344689 Neighboring gene microRNA 4330 Neighboring gene G protein-coupled receptor 50 Neighboring gene VISTA enhancer hs1746 Neighboring gene NAB1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21056 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30027 Neighboring gene vacuolar ATPase assembly factor VMA21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • GPR50 antisense RNA 1 (non-protein coding)

Clone Names

  • AF003625.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135300.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF003625
    Related
    ENST00000454196.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    151175198..151177836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    149443177..149445815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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