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RPS26P39 ribosomal protein S26 pseudogene 39 [ Homo sapiens (human) ]

Gene ID: 100128168, updated on 10-Oct-2023

Summary

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Official Symbol
RPS26P39provided by HGNC
Official Full Name
ribosomal protein S26 pseudogene 39provided by HGNC
Primary source
HGNC:HGNC:36958
See related
AllianceGenome:HGNC:36958
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS26_21_1107
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Genomic context

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Location:
10q26.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (123171462..123171898, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (124046484..124046920, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (124930978..124931414, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2902 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2903 Neighboring gene Sharpr-MPRA regulatory region 2134 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4149 Neighboring gene Sharpr-MPRA regulatory region 11829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4151 Neighboring gene uncharacterized LOC107984275 Neighboring gene H6 family homeobox 2 Neighboring gene BUB3 mitotic checkpoint protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:124984539-124985040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125034867-125035366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4153 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2904 Neighboring gene long intergenic non-protein coding RNA 2641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4158 Neighboring gene VISTA enhancer hs578 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:125194236-125194421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125206418-125206918 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:125218162-125218857 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125218858-125219552 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125219553-125220248 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:125251140-125251910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125256249-125256976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125256977-125257703 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125272859-125273407 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125273408-125273955 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:125298302-125299501 Neighboring gene uncharacterized LOC105378530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125309926-125310436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125310437-125310946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4161 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125317863-125318581

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population. Pyun JA, et al. Menopause, 2014 May. PMID 24045676
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010876.3 

    Range
    101..537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    123171462..123171898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    124046484..124046920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases