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RPS15AP40 ribosomal protein S15a pseudogene 40 [ Homo sapiens (human) ]

Gene ID: 100128083, updated on 10-Oct-2023

Summary

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Official Symbol
RPS15AP40provided by HGNC
Official Full Name
ribosomal protein S15a pseudogene 40provided by HGNC
Primary source
HGNC:HGNC:36041
See related
Ensembl:ENSG00000233921 AllianceGenome:HGNC:36041
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS15A_26_1770
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Genomic context

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Location:
Xp21.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (36374755..36375213, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (35970535..35970993, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (36392870..36393328, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 47 Neighboring gene RNA, U6 small nuclear 641, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:36216564-36217118 Neighboring gene NANOG hESC enhancer GRCh37_chrX:36233110-36233611 Neighboring gene high mobility group box 1 pseudogene 16 Neighboring gene uncharacterized LOC101928627 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:36449855-36451054 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:36451102-36451307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:36489007-36489587 Neighboring gene uncharacterized LOC105373155 Neighboring gene H2A.L variant histone 1Q

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010442.1 

    Range
    101..559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    36374755..36375213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    35970535..35970993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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