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DPPA2P3 developmental pluripotency associated 2 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100128023, updated on 10-Oct-2023

Summary

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Official Symbol
DPPA2P3provided by HGNC
Official Full Name
developmental pluripotency associated 2 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:44628
See related
AllianceGenome:HGNC:44628
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q29
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (193993093..193994238, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (196689752..196690898, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (193710882..193712027, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374286 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:193600622-193601821 Neighboring gene uncharacterized LOC105374287 Neighboring gene Sharpr-MPRA regulatory region 4772 Neighboring gene VISTA enhancer hs1344 Neighboring gene VISTA enhancer hs1453 Neighboring gene long intergenic non-protein coding RNA 2026 Neighboring gene Sharpr-MPRA regulatory region 6900 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:193714630-193715557 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193721507-193722022 Neighboring gene long intergenic non-protein coding RNA 2028 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193749967-193750544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193774732-193775677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193780351-193780851 Neighboring gene uncharacterized LOC102724877 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21012 Neighboring gene Sharpr-MPRA regulatory region 14852 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21014 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15013 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15014 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:193853895-193855094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21016 Neighboring gene hes family bHLH transcription factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027764.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024559

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    193993093..193994238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    196689752..196690898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases