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DEPDC1P2 DEP domain containing 1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 100126446, updated on 10-Oct-2023

Summary

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Official Symbol
DEPDC1P2provided by HGNC
Official Full Name
DEP domain containing 1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:33975
See related
AllianceGenome:HGNC:33975
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
9q31.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (105758081..105761805)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (117932760..117936484)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (108520362..108524086)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28746 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20154 Neighboring gene uncharacterized LOC107987107 Neighboring gene serine and arginine rich splicing factor 10 pseudogene Neighboring gene Sharpr-MPRA regulatory region 1451 Neighboring gene MPRA-validated peak7316 silencer Neighboring gene transmembrane protein 38B Neighboring gene TAL bHLH transcription factor 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:108544378-108545028 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:108545029-108545679 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:108597740-108598240 Neighboring gene solute carrier family 25 member 6 pseudogene 5 Neighboring gene uncharacterized LOC107987108 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:108720067-108720622 Neighboring gene uncharacterized LOC107987109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Clone Names

  • FLJ20483

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007042.3 

    Range
    101..3825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    105758081..105761805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    117932760..117936484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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