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YBX2P1 YBX2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100124332, updated on 10-Oct-2023

Summary

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Official Symbol
YBX2P1provided by HGNC
Official Full Name
YBX2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:49498
See related
AllianceGenome:HGNC:49498
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
10q26.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (123991615..123992671)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (124868800..124869856)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (125751131..125752187)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene carboxypeptidase X, M14 family member 2 Neighboring gene uncharacterized LOC105378534 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:125685728-125686927 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125707945-125708625 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125710066-125710566 Neighboring gene uncharacterized LOC107984128 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10754 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_10761 and experimental_10770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125754121-125754683 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125754684-125755246 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125763289-125763856 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125763857-125764422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125765089-125765590 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125779847-125780352 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125780353-125780859 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10820 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125785865-125786861 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125793037-125793559 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125793560-125794081 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2906 Neighboring gene carbohydrate sulfotransferase 15 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125807976-125808476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125808477-125808977 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125810019-125810519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125816334-125816862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125819356-125820031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125832991-125833492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125833493-125833992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4163 Neighboring gene uncharacterized LOC105378536

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • Y-box binding protein 2 pseudogene 1

Clone Names

  • KIAA0598

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006652.2 

    Range
    101..1157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    123991615..123992671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    124868800..124869856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials