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Ppp4r1l-ps protein phosphatase 4, regulatory subunit 1-like, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 100043911, updated on 8-Feb-2024

Summary

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Official Symbol
Ppp4r1l-psprovided by MGI
Official Full Name
protein phosphatase 4, regulatory subunit 1-like, pseudogeneprovided by MGI
Primary source
MGI:MGI:1924560
See related
Ensembl:ENSMUSG00000121504 AllianceGenome:MGI:1924560
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ppp4r1l; 1700007P14Rik; 5830403E09Rik; C030010B13Rik
Expression
Ubiquitous expression in testis adult (RPKM 7.9), limb E14.5 (RPKM 7.4) and 28 other tissues See more
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Genomic context

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Location:
2 H4; 2 97.06 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (173421113..173501332, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173579320..173659539, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 54093 Neighboring gene ankyrin repeat domain 60 Neighboring gene STARR-positive B cell enhancer ABC_E8799 Neighboring gene STARR-positive B cell enhancer ABC_E7891 Neighboring gene RAB22A, member RAS oncogene family Neighboring gene STARR-positive B cell enhancer ABC_E648 Neighboring gene microRNA 6340 Neighboring gene RIKEN cDNA 1700010B08 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
  2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027957.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL807384, AL845503
    Related
    ENSMUST00000141051.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    173421113..173501332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033179.1: Suppressed sequence

    Description
    NM_001033179.1: This RefSeq was suppressed because there is support for the transcript but the predicted protein is not supported by current protein (homology) data.

  2. NM_001039579.1: Suppressed sequence

    Description
    NM_001039579.1: This RefSeq was suppressed because there is support for the transcript but the predicted protein is not supported by current protein (homology) data.
Nucleotide Protein Strain
Heading Accession and Version

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