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Inafm2 InaF motif containing 2 [ Mus musculus (house mouse) ]

Gene ID: 100043272, updated on 8-Mar-2024

Summary

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Official Symbol
Inafm2provided by MGI
Official Full Name
InaF motif containing 2provided by MGI
Primary source
MGI:MGI:1915354
See related
Ensembl:ENSMUSG00000074918 AllianceGenome:MGI:1915354
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5430417L22Rik
Summary
Orthologous to human INAFM2 (InaF motif containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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See Inafm2 in Genome Data Viewer
Location:
2 E5; 2 59.45 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (118576239..118579291)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (118745758..118748810)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5965 Neighboring gene ankyrin repeat domain 63 Neighboring gene phospholipase C, beta 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118554101-118554254 Neighboring gene STARR-positive B cell enhancer ABC_E7850 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118556392-118556593 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118571143-118571444 Neighboring gene coiled-coil domain containing 9B Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118588340-118588523 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118590344-118590645 Neighboring gene predicted gene, 54146 Neighboring gene proline/histidine/glycine-rich 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

General protein information

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Preferred Names
putative transmembrane protein INAFM2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301269.1 → NP_001288198.1  putative transmembrane protein INAFM2

    Status: VALIDATED

    Source sequence(s)
    AL772255
    Consensus CDS
    CCDS89539.1
    UniProtKB/TrEMBL
    A0A1L1STD6
    Related
    ENSMUSP00000150273.2, ENSMUST00000149978.2
    Conserved Domains (1) summary
    pfam15018
    Location:31 → 63
    InaF-motif; TRP-interacting helix

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    118576239..118579291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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