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Gm4258 predicted gene 4258 [ Mus musculus (house mouse) ]

Gene ID: 100043143, updated on 8-Feb-2024

Summary

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Official Symbol
Gm4258provided by MGI
Official Full Name
predicted gene 4258provided by MGI
Primary source
MGI:MGI:3782435
See related
AllianceGenome:MGI:3782435
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in bladder; lamina propria of bladder; and urinary system. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in thymus adult (RPKM 1.9), whole brain E14.5 (RPKM 0.8) and 8 other tissues See more
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Genomic context

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Location:
1 E4; 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (137826161..137890514)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (137898464..137963020)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02454 Neighboring gene predicted gene, 22727 Neighboring gene predicted gene, 34306 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:139703345-139703646 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:139709614-139709797 Neighboring gene STARR-seq mESC enhancer starr_02455 Neighboring gene STARR-positive B cell enhancer ABC_E5808 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:139795126-139795327 Neighboring gene STARR-seq mESC enhancer starr_02457 Neighboring gene STARR-positive B cell enhancer mm9_chr1:139814060-139814360 Neighboring gene STARR-positive B cell enhancer ABC_E3305 Neighboring gene predicted gene, 41959 Neighboring gene microRNA 181a-1 Neighboring gene microRNA 181b-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    137826161..137890514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003948015.2 RNA Sequence

  2. XR_003948014.2 RNA Sequence

  3. XR_004935425.1 RNA Sequence

  4. XR_003948013.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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