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4632428C04Rik RIKEN cDNA 4632428C04 gene [ Mus musculus (house mouse) ]

Gene ID: 100043102, updated on 8-Feb-2024

Summary

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Official Symbol
4632428C04Rikprovided by MGI
Official Full Name
RIKEN cDNA 4632428C04 geneprovided by MGI
Primary source
MGI:MGI:1921600
See related
Ensembl:ENSMUSG00000097184 AllianceGenome:MGI:1921600
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4231
Expression
Broad expression in lung adult (RPKM 3.0), spleen adult (RPKM 1.8) and 18 other tissues See more
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Genomic context

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See 4632428C04Rik in Genome Data Viewer
Location:
16 B2; 16 21.05 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (29827485..29840248)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (30008667..30021430)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52263 Neighboring gene STARR-seq mESC enhancer starr_40544 Neighboring gene STARR-seq mESC enhancer starr_40545 Neighboring gene predicted gene 1968 Neighboring gene STARR-seq mESC enhancer starr_40548 Neighboring gene predicted gene, 32796 Neighboring gene RIKEN cDNA 9030404E10 gene Neighboring gene STARR-positive B cell enhancer ABC_E7436 Neighboring gene STARR-positive B cell enhancer ABC_E10898 Neighboring gene STARR-positive B cell enhancer mm9_chr16:30065096-30065397 Neighboring gene hes family bHLH transcription factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A long noncoding RNA CHAIR protects the heart from pathological stress. Qian Y, et al. Clin Sci (Lond), 2020 Jul 17. PMID 32643756
  2. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A long noncoding RNA CHAIR protects the heart from pathological stress.
    Title: A long noncoding RNA CHAIR protects the heart from pathological stress.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033631.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CT030736
    Related
    ENSMUST00000181485.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    29827485..29840248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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