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1700049E17Rik2 tandem duplication of RIKEN cDNA 1700049E17 gene, gene 2 [ Mus musculus (house mouse) ]

Gene ID: 100041722, updated on 3-Apr-2024

Summary

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Official Symbol
1700049E17Rik2provided by MGI
Official Full Name
tandem duplication of RIKEN cDNA 1700049E17 gene, gene 2provided by MGI
Primary source
MGI:MGI:3796510
See related
Ensembl:ENSMUSG00000090440 AllianceGenome:MGI:3796510
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 2.4) See more
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Genomic context

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See 1700049E17Rik2 in Genome Data Viewer
Location:
14 B; 14 22.38 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (41257382..41303262)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (41535425..41581305)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53867 Neighboring gene predicted gene 7954 Neighboring gene STARR-seq mESC enhancer starr_36485 Neighboring gene predicted gene 7970 Neighboring gene STARR-seq mESC enhancer starr_36496 Neighboring gene predicted gene, 46479 Neighboring gene predicted gene 3072 Neighboring gene predicted gene 8065

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
uncharacterized protein LOC100041722

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358037.1 → NP_001344966.1  uncharacterized protein LOC100041722

    Status: VALIDATED

    Source sequence(s)
    AC166080
    Consensus CDS
    CCDS88632.1
    UniProtKB/TrEMBL
    E9Q8F7, F6QVC4, K7N6Y5
    Related
    ENSMUSP00000130091.3, ENSMUST00000163912.3
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 128
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    41257382..41303262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247558.1 → XP_030103418.1  uncharacterized protein LOC100041722 isoform X2

    UniProtKB/TrEMBL
    A0AA74KT87
    Conserved Domains (2) summary
    pfam04822
    Location:13 → 92
    Takusan
    cl19219
    Location:37 → 150
    FapA; Flagellar Assembly Protein A

  2. XM_030247560.1 → XP_030103420.1  uncharacterized protein LOC100041722 isoform X2

    UniProtKB/TrEMBL
    A0AA74KT87
    Conserved Domains (2) summary
    pfam04822
    Location:13 → 92
    Takusan
    cl19219
    Location:37 → 150
    FapA; Flagellar Assembly Protein A

  3. XM_030247559.1 → XP_030103419.1  uncharacterized protein LOC100041722 isoform X2

    UniProtKB/TrEMBL
    A0AA74KT87
    Conserved Domains (2) summary
    pfam04822
    Location:13 → 92
    Takusan
    cl19219
    Location:37 → 150
    FapA; Flagellar Assembly Protein A

  4. XM_030247557.1 → XP_030103417.1  uncharacterized protein LOC100041722 isoform X1

    UniProtKB/TrEMBL
    A0AA74KT87
    Conserved Domains (2) summary
    pfam04822
    Location:48 → 127
    Takusan
    cl19219
    Location:72 → 185
    FapA; Flagellar Assembly Protein A
Nucleotide Protein Strain
Heading Accession and Version

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