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Gm15340 predicted gene 15340 [ Mus musculus (house mouse) ]

Gene ID: 100040997, updated on 8-Feb-2024

Summary

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Official Symbol
Gm15340provided by MGI
Official Full Name
predicted gene 15340provided by MGI
Primary source
MGI:MGI:3705158
See related
AllianceGenome:MGI:3705158
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

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Location:
16 C4; 16 56.73 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (95701661..95702895)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41603 Neighboring gene STARR-seq mESC enhancer starr_41604 Neighboring gene STARR-seq mESC enhancer starr_41606 Neighboring gene predicted gene 6599 Neighboring gene predicted gene, 32130 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96032911-96033064 Neighboring gene predicted gene, 41509 Neighboring gene STARR-positive B cell enhancer ABC_E8915 Neighboring gene RIKEN cDNA 1600002D24 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96091084-96091462 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96091906-96092255 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96121787-96122048 Neighboring gene predicted gene, 41508 Neighboring gene STARR-positive B cell enhancer ABC_E1930 Neighboring gene STARR-seq mESC enhancer starr_41608 Neighboring gene STARR-seq mESC enhancer starr_41610 Neighboring gene STARR-positive B cell enhancer mm9_chr16:96212367-96212668 Neighboring gene proteasome (prosome, macropain) assembly chaperone 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000082.7 Chromosome 16 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188882.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125079

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    95701661..95702895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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