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Pramel3d PRAME like 3D [ Mus musculus (house mouse) ]

Gene ID: 100040635, updated on 3-Apr-2024

Summary

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Official Symbol
Pramel3dprovided by MGI
Official Full Name
PRAME like 3Dprovided by MGI
Primary source
MGI:MGI:3805552
See related
Ensembl:ENSMUSG00000079432 AllianceGenome:MGI:3805552
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm15023
Summary
Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 3.5) See more
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Genomic context

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Location:
X F1; X 56.64 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (134068277..134078402, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (135167528..135177653, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene preferentially expressed antigen in melanoma-like 3 pseudogene Neighboring gene predicted gene, 25868 Neighboring gene transcription elongation factor A (SII)-like 6 Neighboring gene predicted gene, 57675

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC141353, MGC141359, MGC141360

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
pramel3 family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099321.3 → NP_001092791.2  pramel3 family member

    Status: VALIDATED

    Source sequence(s)
    AL954643
    Consensus CDS
    CCDS53186.1
    UniProtKB/TrEMBL
    L7MUB4, Q1RLK3
    Related
    ENSMUSP00000108808.3, ENSMUST00000113183.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    134068277..134078402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528465.3 → XP_006528528.1  pramel3 family member isoform X1

    UniProtKB/TrEMBL
    Q8C0W2
    Conserved Domains (1) summary
    sd00033
    Location:243 → 273
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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