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Wincr1 WNT induced non-coding RNA 1 [ Mus musculus (house mouse) ]

Gene ID: 100040617, updated on 8-Feb-2024

Summary

Official Symbol
Wincr1provided by MGI
Official Full Name
WNT induced non-coding RNA 1provided by MGI
Primary source
MGI:MGI:3649757
See related
Ensembl:ENSMUSG00000085183 AllianceGenome:MGI:3649757
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12603
Summary
Acts upstream of or within with a positive effect on gene expression. Is expressed in back skin; future brain; head skin; and neocortex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
4 C4; 4 42.12 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (88968544..89002847)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (89050307..89084610)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 49890 Neighboring gene microRNA 31 Neighboring gene predicted gene, 34568 Neighboring gene STARR-seq mESC enhancer starr_10732 Neighboring gene STARR-seq mESC enhancer starr_10733 Neighboring gene predicted gene 12602 Neighboring gene STARR-positive B cell enhancer ABC_E10240 Neighboring gene STARR-positive B cell enhancer ABC_E6189 Neighboring gene STARR-positive B cell enhancer ABC_E7974 Neighboring gene methylthioadenosine phosphorylase Neighboring gene ribosomal protein L17 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033533.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL805899, BX255927
    Related
    ENSMUST00000146678.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    88968544..89002847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)